Organism:Danio rerio

Link to Data Series on GEO

Data Format/Notes

Small RNA from total gonads or Argonaute IPs were cloned and sequenced using 454 GS FLX system.

Publication Reference

Houwing S, Berezikov E, Ketting RF
Zili is required for germ cell differentiation and meiosis in zebrafish.
EMBO J 2008 Oct 22;27(20):2702-11. PMID: 18833190

Available Data Sets (Soft format – direct from GEO)

1. Ziwi-IP small RNAs from zebrafish testes; testes from adult TL (GSM315423)
2. Zili-IP small RNAs from zebrafish ovaries; ovary from adult TL (GSM315420)
3. Ziwi-IP small RNAs from zebrafish ovaries; ovary from adult TL (GSM315421)
4. Small RNAs from wild-type zebrafish gonads; 5 week old TL animals (GSM315424)
5. small RNAs from zili mutant zebrafish gonads; 5 week old hu3173 animals (TL background) (GSM315425)

Available Data Sets (FASTA format, more suitable for tools)

1. Ziwi-IP small RNAs from zebrafish testes; testes from adult TL
2. Zili-IP small RNAs from zebrafish ovaries; ovary from adult TL
3. Ziwi-IP small RNAs from zebrafish ovaries; ovary from adult TL
4. Small RNAs from wild-type zebrafish gonads; 5 week old TL animals
5. small RNAs from zili mutant zebrafish gonads; 5 week old hu3173 animals (TL background)

Tags: Data:Danio rerio

Filed under Other Animal Data.