A toolkit for analyzing large-scale animal small RNA datasets.
Tools available include
- Sequence file pre-processing: Sequence adaptor removal and conversion to FASTA format
- Filter tool: Filter sequences in large-scale data sets
- miRProf: Expression profiles of known miRNAs from large scale sRNA data sets
- miRCat: Identification of miRNA sequences in large-scale sRNA data sets
- SiLoCo: Identification and comparison of sRNA-producing loci in large-scale data sets
- SiLoMa: Generate graphical maps of individual sRNA loci.
- RNA folding/annotation: For highlighting sRNA locations on a folded RNA sequence.