SIROCCO http://www.sirocco-project.eu Silencing RNAs: organisers and coordinators of complexity in eukaryotic organisms Thu, 09 Sep 2010 11:32:28 +0000 en hourly 1 http://wordpress.org/?v=3.0.1 SIMBioMS Data share software status. http://www.sirocco-project.eu/simbioms-data-share-software-status/ http://www.sirocco-project.eu/simbioms-data-share-software-status/#comments Thu, 09 Sep 2010 11:32:28 +0000 julio http://www.sirocco-project.eu/?p=1907 Hi all,

Here at SIMBioMS, we’ve been collecting information on what data users produce in order to be able to configure a version of our software AIMS to help with data sharing.

So far only 3 data providers have shared the required information with us so if you still need to send us your information this is the data that we require:

-Email of the person in your lab to be contacted for information about the
data files. Once initial information is obtained, we will be contacting
partners individually for more details.
-Type of data produced (i.e. Illumina short read RNA).
-Metadata associated with the data file (what extra information is attached
to the data file that is going to be shared).
-What software/tool has been used to process the data if sending raw a
process data file.

Please see attached file for information about the capture information Sirocco

You can send us an email with this information to Sirocco@ebi.ac.uk

For a preview on a test instance of AIMS please visit:  http://simbioms-pub.mii.lu.lv/AIMS/

]]> http://www.sirocco-project.eu/simbioms-data-share-software-status/feed/ 0 IX CRG ANNUAL SYMPOSIUM – MEDICAL GENOME SEQUENCING http://www.sirocco-project.eu/ix-crg-annual-symposium-medical-genome-sequencing/ http://www.sirocco-project.eu/ix-crg-annual-symposium-medical-genome-sequencing/#comments Tue, 07 Sep 2010 15:39:51 +0000 Aileen Hogan http://www.sirocco-project.eu/?p=1903 IX CRG ANNUAL SYMPOSIUM – MEDICAL GENOME SEQUENCING: UNDERSTANDING THE GENOMES OF DISEASE – 28/29 OCTOBER 2010, BARCELONA, SPAIN 

Organizers: Xavier Estivill and Roderic Guigo

http://www.crg.cat/2010_annual_symposium

CRG Symposium Flyer

]]> http://www.sirocco-project.eu/ix-crg-annual-symposium-medical-genome-sequencing/feed/ 0 MicroRNAs Involved in Molecular Circuitries Relevant for the Duchenne Muscular Dystrophy Pathogenesis Are Controlled by the Dystrophin/nNOS Pathway. http://www.sirocco-project.eu/micrornas-involved-in-molecular-circuitries-relevant-for-the-duchenne-muscular-dystrophy-pathogenesis-are-controlled-by-the-dystrophinnnos-pathway/ http://www.sirocco-project.eu/micrornas-involved-in-molecular-circuitries-relevant-for-the-duchenne-muscular-dystrophy-pathogenesis-are-controlled-by-the-dystrophinnnos-pathway/#comments Fri, 03 Sep 2010 12:20:46 +0000 Aileen Hogan http://www.sirocco-project.eu/?p=1852 Cacchiarelli D, Martone J, Girardi E, Cesana M, Incitti T, Morlando M, Nicoletti C, Santini T, Sthandier O, Barberi L, Auricchio A, Musarò A, Bozzoni I. MicroRNAs Involved in Molecular Circuitries Relevant for the Duchenne Muscular Dystrophy Pathogenesis Are Controlled by the Dystrophin/nNOS Pathway. Cell Metab. 2010 Aug 18. [Epub ahead of print]

]]> http://www.sirocco-project.eu/micrornas-involved-in-molecular-circuitries-relevant-for-the-duchenne-muscular-dystrophy-pathogenesis-are-controlled-by-the-dystrophinnnos-pathway/feed/ 0 A collection of target mimics for comprehensive analysis of microRNA function in Arabidopsis thaliana. http://www.sirocco-project.eu/a-collection-of-target-mimics-for-comprehensive-analysis-of-microrna-function-in-arabidopsis-thaliana/ http://www.sirocco-project.eu/a-collection-of-target-mimics-for-comprehensive-analysis-of-microrna-function-in-arabidopsis-thaliana/#comments Fri, 03 Sep 2010 12:18:50 +0000 Aileen Hogan http://www.sirocco-project.eu/?p=1850 Todesco M, Rubio-Somoza I, Paz-Ares J, Weigel D. A collection of target mimics for comprehensive analysis of microRNA function in Arabidopsis thaliana. PLoS Genet. 2010 Jul 22;6(7):e1001031.

]]> http://www.sirocco-project.eu/a-collection-of-target-mimics-for-comprehensive-analysis-of-microrna-function-in-arabidopsis-thaliana/feed/ 0 Expression, purification and functional characterization of recombinant Zucchini yellow mosaic virus HC-Pro. http://www.sirocco-project.eu/expression-purification-and-functional-characterization-of-recombinant-zucchini-yellow-mosaic-virus-hc-pro/ http://www.sirocco-project.eu/expression-purification-and-functional-characterization-of-recombinant-zucchini-yellow-mosaic-virus-hc-pro/#comments Fri, 03 Sep 2010 12:16:23 +0000 Aileen Hogan http://www.sirocco-project.eu/?p=1848 Fuellgrabe MW, Boonrod K, Jamous R, Moser M, Shiboleth Y, Krczal G, Wassenegger M. Expression, purification and functional characterization of recombinant Zucchini yellow mosaic virus HC-Pro. Protein Expr Purif. 2010 Jul 30. [Epub ahead of print]

]]> http://www.sirocco-project.eu/expression-purification-and-functional-characterization-of-recombinant-zucchini-yellow-mosaic-virus-hc-pro/feed/ 0 Genetic variants and abnormal processing of pre-miR-182, a circadian clock modulator, in major depression patients with late insomnia. http://www.sirocco-project.eu/genetic-variants-and-abnormal-processing-of-pre-mir-182-a-circadian-clock-modulator-in-major-depression-patients-with-late-insomnia/ http://www.sirocco-project.eu/genetic-variants-and-abnormal-processing-of-pre-mir-182-a-circadian-clock-modulator-in-major-depression-patients-with-late-insomnia/#comments Fri, 03 Sep 2010 12:12:24 +0000 Aileen Hogan http://www.sirocco-project.eu/?p=1845 Saus E, Soria V, Escaramís G, Vivarelli F, Crespo JM, Kagerbauer B, Menchón JM, Urretavizcaya M, Gratacòs M, Estivill X. Genetic variants and abnormal processing of pre-miR-182, a circadian clock modulator, in major depression patients with late insomnia. Hum Mol Genet. 2010 Aug 4. [Epub ahead of print]

]]> http://www.sirocco-project.eu/genetic-variants-and-abnormal-processing-of-pre-mir-182-a-circadian-clock-modulator-in-major-depression-patients-with-late-insomnia/feed/ 0 SMADs Stimulate miRNA Processing. http://www.sirocco-project.eu/smads-stimulate-mirna-processing/ http://www.sirocco-project.eu/smads-stimulate-mirna-processing/#comments Fri, 03 Sep 2010 12:09:24 +0000 Aileen Hogan http://www.sirocco-project.eu/?p=1843 Treiber T, Meister G. SMADs Stimulate miRNA Processing.  Mol Cell. 2010 Aug 13;39(3):315-316.

]]> http://www.sirocco-project.eu/smads-stimulate-mirna-processing/feed/ 0 The microRNAs of Caenorhabditis elegans. http://www.sirocco-project.eu/the-micrornas-of-caenorhabditis-elegans/ http://www.sirocco-project.eu/the-micrornas-of-caenorhabditis-elegans/#comments Fri, 03 Sep 2010 12:07:00 +0000 Aileen Hogan http://www.sirocco-project.eu/?p=1841 Kaufman EJ, Miska EA. The microRNAs of Caenorhabditis elegans. Semin Cell Dev Biol. 2010 Jul 15. [Epub ahead of print]

]]> http://www.sirocco-project.eu/the-micrornas-of-caenorhabditis-elegans/feed/ 0 The widespread regulation of microRNA biogenesis, function and decay. http://www.sirocco-project.eu/the-widespread-regulation-of-microrna-biogenesis-function-and-decay/ http://www.sirocco-project.eu/the-widespread-regulation-of-microrna-biogenesis-function-and-decay/#comments Fri, 03 Sep 2010 11:58:09 +0000 Aileen Hogan http://www.sirocco-project.eu/?p=1832 Krol J, Loedige I, Filipowicz W. The widespread regulation of microRNA biogenesis, function and decay. Nat Rev Genet. 2010 Jul 27. [Epub ahead of print]

]]> http://www.sirocco-project.eu/the-widespread-regulation-of-microrna-biogenesis-function-and-decay/feed/ 0 The Expression of Vasoactive Intestinal Peptide Receptor 1 Is Negatively Modulated by MicroRNA 525-5p. http://www.sirocco-project.eu/the-expression-of-vasoactive-intestinal-peptide-receptor-1-is-negatively-modulated-by-microrna-525-5p/ http://www.sirocco-project.eu/the-expression-of-vasoactive-intestinal-peptide-receptor-1-is-negatively-modulated-by-microrna-525-5p/#comments Fri, 03 Sep 2010 11:51:34 +0000 Aileen Hogan http://www.sirocco-project.eu/?p=1830 Cocco E, Paladini F, Macino G, Fulci V, Fiorillo MT, Sorrentino R. The Expression of Vasoactive Intestinal Peptide Receptor 1 Is Negatively Modulated by MicroRNA 525-5p. PLoS One. 2010 Aug 10;5(8). pii: e12067

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